PoplarV1, Main, Exploration, bibRecord, 002921

Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.

Identifieur interne : 002921 ( Main/Exploration ); précédent : 002920; suivant : 002922

Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.

Auteurs : Sheng Zhu [République populaire de Chine] ; You-Zhi Cao ; Cong Jiang ; Bi-Yue Tan ; Zhong Wang ; Sisi Feng ; Liang Zhang ; Xiao-Hua Su ; Brona Brejova ; Tomas Vinar ; Meng Xu ; Ming-Xiu Wang ; Shou-Gong Zhang ; Min-Ren Huang ; Rongling Wu ; Yan Zhou

Source :

BMC genomics [ 1471-2164 ] ; 2012.

RBID : pubmed:22876864

Descripteurs français

KwdFr :
- ARN fongique (génétique), Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ADN (MeSH), Annotation de séquence moléculaire (MeSH), Ascomycota (génétique), Ascomycota (pathogénicité), Génome fongique (MeSH), Interactions hôte-pathogène (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Populus (génétique), Populus (microbiologie), Évolution biologique (MeSH).
MESH :
- génétique : ARN fongique, Ascomycota, Maladies des plantes, Populus.
- microbiologie : Maladies des plantes, Populus.
- pathogénicité : Ascomycota.
- Analyse de profil d'expression de gènes, Analyse de séquence d'ADN, Annotation de séquence moléculaire, Génome fongique, Interactions hôte-pathogène, Phylogenèse, Évolution biologique.

English descriptors

KwdEn :
- Ascomycota (genetics), Ascomycota (pathogenicity), Biological Evolution (MeSH), Gene Expression Profiling (MeSH), Genome, Fungal (MeSH), Host-Pathogen Interactions (MeSH), Molecular Sequence Annotation (MeSH), Phylogeny (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Populus (genetics), Populus (microbiology), RNA, Fungal (genetics), Sequence Analysis, DNA (MeSH).
MESH :
- chemical , genetics : RNA, Fungal.
- genetics : Ascomycota, Plant Diseases, Populus.
- microbiology : Plant Diseases, Populus.
- pathogenicity : Ascomycota.
- Biological Evolution, Gene Expression Profiling, Genome, Fungal, Host-Pathogen Interactions, Molecular Sequence Annotation, Phylogeny, Sequence Analysis, DNA.

Abstract

BACKGROUND

The fungus Marssonina brunnea is a causal pathogen of Marssonina leaf spot that devastates poplar plantations by defoliating susceptible trees before normal fall leaf drop.

RESULTS

We sequence the genome of M. brunnea with a size of 52 Mb assembled into 89 scaffolds, representing the first sequenced Dermateaceae genome. By inoculating this fungus onto a poplar hybrid clone, we investigate how M. brunnea interacts and co-evolves with its host to colonize poplar leaves. While a handful of virulence genes in M. brunnea, mostly from the LysM family, are detected to up-regulate during infection, the poplar down-regulates its resistance genes, such as nucleotide binding site domains and leucine rich repeats, in response to infection. From 10,027 predicted proteins of M. brunnea in a comparison with those from poplar, we identify four poplar transferases that stimulate the host to resist M. brunnea. These transferas-encoding genes may have driven the co-evolution of M. brunnea and Populus during the process of infection and anti-infection.

CONCLUSIONS

Our results from the draft sequence of the M. brunnea genome provide evidence for genome-genome interactions that play an important role in poplar-pathogen co-evolution. This knowledge could help to design effective strategies for controlling Marssonina leaf spot in poplar.

DOI: 10.1186/1471-2164-13-382
PubMed: 22876864
PubMed Central: PMC3484023

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 002935
to stream Main, to step Curation: 002935

Le document en format XML

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<term>Gene Expression Profiling (MeSH)</term>
<term>Genome, Fungal (MeSH)</term>
<term>Host-Pathogen Interactions (MeSH)</term>
<term>Molecular Sequence Annotation (MeSH)</term>
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<term>Plant Diseases (microbiology)</term>
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<term>Populus (microbiology)</term>
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<term>Ascomycota (pathogénicité)</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>The fungus Marssonina brunnea is a causal pathogen of Marssonina leaf spot that devastates poplar plantations by defoliating susceptible trees before normal fall leaf drop.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>We sequence the genome of M. brunnea with a size of 52 Mb assembled into 89 scaffolds, representing the first sequenced Dermateaceae genome. By inoculating this fungus onto a poplar hybrid clone, we investigate how M. brunnea interacts and co-evolves with its host to colonize poplar leaves. While a handful of virulence genes in M. brunnea, mostly from the LysM family, are detected to up-regulate during infection, the poplar down-regulates its resistance genes, such as nucleotide binding site domains and leucine rich repeats, in response to infection. From 10,027 predicted proteins of M. brunnea in a comparison with those from poplar, we identify four poplar transferases that stimulate the host to resist M. brunnea. These transferas-encoding genes may have driven the co-evolution of M. brunnea and Populus during the process of infection and anti-infection.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>Our results from the draft sequence of the M. brunnea genome provide evidence for genome-genome interactions that play an important role in poplar-pathogen co-evolution. This knowledge could help to design effective strategies for controlling Marssonina leaf spot in poplar.</p>
</div>
</front>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The fungus Marssonina brunnea is a causal pathogen of Marssonina leaf spot that devastates poplar plantations by defoliating susceptible trees before normal fall leaf drop.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We sequence the genome of M. brunnea with a size of 52 Mb assembled into 89 scaffolds, representing the first sequenced Dermateaceae genome. By inoculating this fungus onto a poplar hybrid clone, we investigate how M. brunnea interacts and co-evolves with its host to colonize poplar leaves. While a handful of virulence genes in M. brunnea, mostly from the LysM family, are detected to up-regulate during infection, the poplar down-regulates its resistance genes, such as nucleotide binding site domains and leucine rich repeats, in response to infection. From 10,027 predicted proteins of M. brunnea in a comparison with those from poplar, we identify four poplar transferases that stimulate the host to resist M. brunnea. These transferas-encoding genes may have driven the co-evolution of M. brunnea and Populus during the process of infection and anti-infection.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Our results from the draft sequence of the M. brunnea genome provide evidence for genome-genome interactions that play an important role in poplar-pathogen co-evolution. This knowledge could help to design effective strategies for controlling Marssonina leaf spot in poplar.</AbstractText>
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<Author ValidYN="Y"><LastName>Jiang</LastName>
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Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.

Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution.

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